WormBase Tree Display for CDS: PPA37676
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PPA37676 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 114 | |||
165 | 275 | |||||
414 | 424 | |||||
501 | 662 | |||||
711 | 830 | |||||
873 | 951 | |||||
1049 | 1147 | |||||
1197 | 1259 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S66-43.31 | ||
DB_remark | contains similarity to Pfam domain PF02880 (Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III); contains similarity to Interpro domains IPR016055 (Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III), IPR036900 (Alpha-D-phosphohexomutase, C-terminal domain superfamily), IPR005846 (Alpha-D-phosphohexomutase, alpha/beta/alpha domain III) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276045 | ||||
Corresponding_transcript | PPA37676.1 | |||||
Corresponding_protein | PP68928 | |||||
Corresponding_oligo_set | GPL14372_Probes_86800 | |||||
GPL14372_Probes_86801 | ||||||
Microarray_results | GPL14372_Probes_86800 | |||||
GPL14372_Probes_86801 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |