WormBase Tree Display for CDS: PPA37687
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PPA37687 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 25 | |||
101 | 186 | |||||
1126 | 1182 | |||||
1231 | 1302 | |||||
1347 | 1454 | |||||
1565 | 1657 | |||||
1703 | 1789 | |||||
1840 | 1965 | |||||
2174 | 2302 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-0.1 | ||
DB_remark | contains similarity to Pfam domain PF01553 (Acyltransferase); contains similarity to Interpro domains IPR002123 (Phospholipid/glycerol acyltransferase), IPR004552 (1-acyl-sn-glycerol-3-phosphate acyltransferase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276056 | ||||
Corresponding_transcript | PPA37687.1 | |||||
Corresponding_protein | PP73055 | |||||
Corresponding_oligo_set | GPL14372_Probes_28237 | |||||
GPL14372_Probes_28240 | ||||||
GPL14372_Probes_28241 | ||||||
Matching_cDNA | EB183353 | Inferred_automatically | transcript_builder.pl | |||
EB182872 | Inferred_automatically | transcript_builder.pl | ||||
EB184185 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_28237 | |||||
GPL14372_Probes_28240 | ||||||
GPL14372_Probes_28241 | ||||||
RNASeq_FPKM | WBls:0000032 | 132.062 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 103.99 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |