WormBase Tree Display for CDS: PPA37707
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| PPA37707 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 120 | |||
| 166 | 366 | |||||
| 431 | 552 | |||||
| 649 | 716 | |||||
| 806 | 899 | |||||
| 977 | 989 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-2.62 | ||
| DB_remark | contains similarity to Pfam domain PF01176 (Translation initiation factor 1A / IF-1); contains similarity to Interpro domains IPR039294 (Probable RNA-binding protein EIF1AD), IPR006196 (RNA-binding domain, S1, IF1 type), IPR012340 (Nucleic acid-binding, OB-fold), IPR001253 (Translation initiation factor 1A (eIF-1A)) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00276076 | ||||
| Corresponding_transcript | PPA37707.1 | |||||
| Corresponding_protein | PP70699 | |||||
| Corresponding_oligo_set | GPL14372_Probes_34018 | |||||
| GPL14372_Probes_34019 | ||||||
| GPL14372_Probes_48967 | ||||||
| GPL14372_Probes_48969 | ||||||
| Matching_cDNA | FE934443 | Inferred_automatically | transcript_builder.pl | |||
| FG101652 | Inferred_automatically | transcript_builder.pl | ||||
| FE940117 | Inferred_automatically | transcript_builder.pl | ||||
| AW114807 | Inferred_automatically | transcript_builder.pl | ||||
| FE939607 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_34018 | |||||
| GPL14372_Probes_34019 | ||||||
| GPL14372_Probes_48967 | ||||||
| GPL14372_Probes_48969 | ||||||
| RNASeq_FPKM | WBls:0000032 | 65.565 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 118.442 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
