WormBase Tree Display for CDS: PPA37735
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PPA37735 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 93 | |||
139 | 263 | |||||
331 | 425 | |||||
1766 | 1895 | |||||
2170 | 2200 | |||||
2399 | 2447 | |||||
2683 | 2810 | |||||
2946 | 3063 | |||||
3214 | 3287 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-6.8 | ||
DB_remark | contains similarity to Pfam domain PF00112 (Papain family cysteine protease); contains similarity to Interpro domains IPR038765 (Papain-like cysteine peptidase superfamily), IPR000668 (Peptidase C1A, papain C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00276104 | ||||
Corresponding_transcript | PPA37735.1 | |||||
Corresponding_protein | PP52262 | |||||
Corresponding_oligo_set | GPL14372_Probes_49195 | |||||
GPL14372_Probes_49196 | ||||||
Microarray_results | GPL14372_Probes_49195 | |||||
GPL14372_Probes_49196 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |