WormBase Tree Display for CDS: PPA37749
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PPA37749 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (17) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-8.32 | ||
DB_remark | PPA-DMD-8.1 protein; contains similarity to Pfam domains PF00017 (SH2 domain), PF00751 (DM DNA binding domain), PF14604 (Variant SH3 domain); contains similarity to Interpro domains IPR036860 (SH2 domain superfamily), IPR036407 (DM DNA-binding domain superfamily), IPR036028 (SH3-like domain superfamily), IPR001275 (DM DNA-binding domain), IPR001452 (SH3 domain), IPR000980 (SH2 domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276118 | ||||
Corresponding_transcript | PPA37749.1 | |||||
Corresponding_protein | PP67112 | |||||
Corresponding_oligo_set | GPL14372_Probes_49305 | |||||
GPL14372_Probes_49306 | ||||||
GPL14372_Probes_49307 | ||||||
Microarray_results | GPL14372_Probes_49305 | |||||
GPL14372_Probes_49306 | ||||||
GPL14372_Probes_49307 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.08509 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |