WormBase Tree Display for CDS: PPA37756
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PPA37756 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (17) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-10.41 | ||
DB_remark | contains similarity to Pfam domains PF00046 (Homeodomain), PF16878 (Transcriptional regulator, SIX1, N-terminal SD domain); contains similarity to Interpro domains IPR031701 (Homeobox protein SIX1, N-terminal SD domain), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276125 | ||||
Corresponding_transcript | PPA37756.1 | |||||
Corresponding_protein | PP65899 | |||||
Corresponding_oligo_set | GPL14372_Probes_49388 | |||||
GPL14372_Probes_49389 | ||||||
GPL14372_Probes_49390 | ||||||
GPL14372_Probes_49391 | ||||||
Microarray_results | GPL14372_Probes_49388 | |||||
GPL14372_Probes_49389 | ||||||
GPL14372_Probes_49390 | ||||||
GPL14372_Probes_49391 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 10.3244 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |