WormBase Tree Display for CDS: PPA37768
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PPA37768 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 90 | |||
175 | 274 | |||||
360 | 535 | |||||
615 | 690 | |||||
766 | 1064 | |||||
1142 | 1371 | |||||
1457 | 1616 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-12.6 | ||
DB_remark | contains similarity to Pfam domain PF00022 (Actin); contains similarity to Interpro domains IPR004000 (Actin family), IPR043129 (ATPase, nucleotide binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276137 | ||||
Corresponding_transcript | PPA37768.1 | |||||
Corresponding_protein | PP07549 | |||||
Matching_cDNA | AI989045 | Inferred_automatically | transcript_builder.pl | |||
AW097784 | Inferred_automatically | transcript_builder.pl | ||||
FG101766 | Inferred_automatically | transcript_builder.pl | ||||
AA191795 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000032 | 1.34078 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |