WormBase Tree Display for CDS: PPA37778
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| PPA37778 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (50) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-14.16 | ||
| DB_remark | PPA-CDC-73 protein; contains similarity to Pfam domains PF03835 (Rad4 transglutaminase-like domain), PF05179 (RNA pol II accessory factor, Cdc73 family, C-terminal), PF10405 (Rad4 beta-hairpin domain 3), PF16050 (Paf1 complex subunit CDC73 N-terminal); contains similarity to Interpro domains IPR018328 (Rad4 beta-hairpin domain 3), IPR007852 (Cdc73/Parafibromin), IPR031336 (Cell division control protein 73, C-terminal), IPR018326 (Rad4 beta-hairpin domain 1), IPR036985 (Transglutaminase-like superfamily), IPR038103 (Cell division control protein 73, C-terminal domain superfamily), IPR038765 (Papain-like cysteine peptidase superfamily), IPR042488 (Rad4, beta-hairpin domain 3 superfamily), IPR032041 (Paf1 complex subunit Cdc73, N-terminal domain), IPR018325 (Rad4/PNGase transglutaminase-like fold) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00276147 | ||||
| Corresponding_transcript | PPA37778.1 | |||||
| Corresponding_protein | PP64337 | |||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA | FG095375 | Inferred_automatically | transcript_builder.pl | |||
| FG103974 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (18) | ||||||
| RNASeq_FPKM | WBls:0000032 | 24.2492 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 24.4251 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
