WormBase Tree Display for CDS: PPA37793
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PPA37793 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (43) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-18.58 | ||
DB_remark | PPA-SYMK-1 protein; contains similarity to Pfam domains PF11935 (Symplekin/PTA1 N-terminal), PF12295 (Symplekin tight junction protein C terminal); contains similarity to Interpro domains IPR022075 (Symplekin C-terminal), IPR011989 (Armadillo-like helical), IPR032460 (Symplekin/Pta1, N-terminal), IPR021850 (Symplekin/Pta1), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
End_not_found | ||||||
Visible | Gene | WBGene00276162 | ||||
Corresponding_transcript | PPA37793.1 | |||||
Corresponding_protein | PP57772 | |||||
Corresponding_oligo_set | GPL14372_Probes_49997 | |||||
GPL14372_Probes_49999 | ||||||
GPL14372_Probes_50000 | ||||||
GPL14372_Probes_50001 | ||||||
GPL14372_Probes_50004 | ||||||
GPL14372_Probes_50005 | ||||||
Matching_cDNA | FG106033 | Inferred_automatically | transcript_builder.pl | |||
FG105386 | Inferred_automatically | transcript_builder.pl | ||||
FG105589 | Inferred_automatically | transcript_builder.pl | ||||
FG103481 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_49997 | |||||
GPL14372_Probes_49999 | ||||||
GPL14372_Probes_50000 | ||||||
GPL14372_Probes_50001 | ||||||
GPL14372_Probes_50004 | ||||||
GPL14372_Probes_50005 | ||||||
RNASeq_FPKM | WBls:0000032 | 0.700679 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.65488 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |