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WormBase Tree Display for CDS: PPA37793

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Name Class

PPA37793SMapS_parentSequencePPA_ChrI
StructureSource_exons (43)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S71-18.58
DB_remarkPPA-SYMK-1 protein; contains similarity to Pfam domains PF11935 (Symplekin/PTA1 N-terminal), PF12295 (Symplekin tight junction protein C terminal); contains similarity to Interpro domains IPR022075 (Symplekin C-terminal), IPR011989 (Armadillo-like helical), IPR032460 (Symplekin/Pta1, N-terminal), IPR021850 (Symplekin/Pta1), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
End_not_found
VisibleGeneWBGene00276162
Corresponding_transcriptPPA37793.1
Corresponding_proteinPP57772
Corresponding_oligo_setGPL14372_Probes_49997
GPL14372_Probes_49999
GPL14372_Probes_50000
GPL14372_Probes_50001
GPL14372_Probes_50004
GPL14372_Probes_50005
Matching_cDNAFG106033Inferred_automaticallytranscript_builder.pl
FG105386Inferred_automaticallytranscript_builder.pl
FG105589Inferred_automaticallytranscript_builder.pl
FG103481Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_49997
GPL14372_Probes_49999
GPL14372_Probes_50000
GPL14372_Probes_50001
GPL14372_Probes_50004
GPL14372_Probes_50005
RNASeq_FPKMWBls:00000320.700679From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.65488From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated