WormBase Tree Display for CDS: PPA37868
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PPA37868 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrI | |||
Structure | Source_exons (17) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-32.18 | ||
DB_remark | PPA-HPO-31 protein; contains similarity to Pfam domains PF01743 (Poly A polymerase head domain), PF12627 (Probable RNA and SrmB- binding site of polymerase A); contains similarity to Interpro domains IPR002646 (Poly A polymerase, head domain), IPR043519 (Nucleotidyltransferase superfamily), IPR032828 (tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276237 | ||||
Corresponding_transcript | PPA37868.1 | |||||
Corresponding_protein | PP75483 | |||||
Corresponding_oligo_set | GPL14372_Probes_52502 | |||||
GPL14372_Probes_52503 | ||||||
GPL14372_Probes_52504 | ||||||
Microarray_results | GPL14372_Probes_52502 | |||||
GPL14372_Probes_52503 | ||||||
GPL14372_Probes_52504 | ||||||
RNASeq_FPKM | WBls:0000032 | 19.1526 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 25.8521 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 08 Nov 2019 10:07:46 | WBPerson4055 | ||||
Remark | [191108 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | |||
From_analysis | RNASeq | |||||
Method | curated |