WormBase Tree Display for CDS: PPA37937
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PPA37937 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (53) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-46.26 | ||
DB_remark | contains similarity to Pfam domains PF00096 (Zinc finger, C2H2 type), PF00657 (GDSL-like Lipase/Acylhydrolase); contains similarity to Interpro domains IPR001087 (GDSL lipase/esterase), IPR036236 (Zinc finger C2H2 superfamily), IPR036514 (SGNH hydrolase superfamily), IPR013087 (Zinc finger C2H2-type), IPR038885 (Phospholipase B1, membrane-associated) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276306 | ||||
Corresponding_transcript | PPA37937.1 | |||||
Corresponding_protein | PP62523 | |||||
Corresponding_oligo_set | GPL14372_Probes_56145 | |||||
GPL14372_Probes_56146 | ||||||
GPL14372_Probes_56147 | ||||||
GPL14372_Probes_56149 | ||||||
GPL14372_Probes_56150 | ||||||
Microarray_results | GPL14372_Probes_56145 | |||||
GPL14372_Probes_56146 | ||||||
GPL14372_Probes_56147 | ||||||
GPL14372_Probes_56149 | ||||||
GPL14372_Probes_56150 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.34312 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |