WormBase Tree Display for CDS: PPA37939
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PPA37939 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 2493 | |||
2867 | 3034 | |||||
3275 | 4533 | |||||
5041 | 5530 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-47.3 | ||
DB_remark | contains similarity to Pfam domains PF03564 (Protein of unknown function (DUF1759)), PF05380 (Pao retrotransposon peptidase), PF13650 (Aspartyl protease), PF17921 (Integrase zinc binding domain), PF18701 (Family of unknown function (DUF5641)); contains similarity to Interpro domains IPR005312 (Protein of unknown function DUF1759), IPR021109 (Aspartic peptidase domain superfamily), IPR040676 (Domain of unknown function DUF5641), IPR008042 (Retrotransposon, Pao), IPR041588 (Integrase zinc-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276308 | ||||
Corresponding_transcript | PPA37939.1 | |||||
Corresponding_protein | PP72232 | |||||
Corresponding_oligo_set (11) | ||||||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |