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WormBase Tree Display for CDS: PPA37939

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Name Class

PPA37939SMapS_parentSequencePPA_ChrI
StructureSource_exons12493
28673034
32754533
50415530
DB_infoDatabasepristionchus.orgcdsgene-UMM-S71-47.3
DB_remarkcontains similarity to Pfam domains PF03564 (Protein of unknown function (DUF1759)), PF05380 (Pao retrotransposon peptidase), PF13650 (Aspartyl protease), PF17921 (Integrase zinc binding domain), PF18701 (Family of unknown function (DUF5641)); contains similarity to Interpro domains IPR005312 (Protein of unknown function DUF1759), IPR021109 (Aspartic peptidase domain superfamily), IPR040676 (Domain of unknown function DUF5641), IPR008042 (Retrotransposon, Pao), IPR041588 (Integrase zinc-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00276308
Corresponding_transcriptPPA37939.1
Corresponding_proteinPP72232
Corresponding_oligo_set (11)
Microarray_results (11)
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated