WormBase Tree Display for CDS: PPA37944
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PPA37944 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 4708 | |||
5258 | 5482 | |||||
5494 | 5545 | |||||
5578 | 5692 | |||||
5773 | 6558 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-47.21 | ||
DB_remark | contains similarity to Pfam domains PF03564 (Protein of unknown function (DUF1759)), PF05380 (Pao retrotransposon peptidase), PF17921 (Integrase zinc binding domain); contains similarity to Interpro domains IPR043502 (DNA/RNA polymerase superfamily), IPR012337 (Ribonuclease H-like superfamily), IPR005312 (Protein of unknown function DUF1759), IPR036397 (Ribonuclease H superfamily), IPR043128 (Reverse transcriptase/Diguanylate cyclase domain), IPR008042 (Retrotransposon, Pao), IPR041588 (Integrase zinc-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276313 | ||||
Corresponding_transcript | PPA37944.1 | |||||
Corresponding_protein | PP72300 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |