WormBase Tree Display for CDS: PPA37958
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| PPA37958 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrIII | |||
| Structure | Source_exons (46) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S112-1.27 | ||
| DB_remark | PPA-TNSL-1 protein; contains similarity to Pfam domains PF12796 (Ankyrin repeats (3 copies)), PF13606 (Ankyrin repeat); contains similarity to Interpro domains IPR002110 (Ankyrin repeat), IPR020683 (Domain of unknown function DUF3447), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR032675 (Leucine-rich repeat domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00276327 | ||||
| Corresponding_transcript | PPA37958.1 | |||||
| Corresponding_protein | PP75209 | |||||
| Corresponding_oligo_set | GPL14372_Probes_65920 | |||||
| GPL14372_Probes_65922 | ||||||
| GPL14372_Probes_65924 | ||||||
| GPL14372_Probes_65925 | ||||||
| GPL14372_Probes_65926 | ||||||
| Microarray_results | GPL14372_Probes_65920 | |||||
| GPL14372_Probes_65922 | ||||||
| GPL14372_Probes_65924 | ||||||
| GPL14372_Probes_65925 | ||||||
| GPL14372_Probes_65926 | ||||||
| RNASeq_FPKM | WBls:0000032 | 3.36043 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.992104 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 13 Sep 2019 10:56:19 | WBPerson4055 | ||||
| Remark | [190913 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
