WormBase Tree Display for CDS: PPA38041
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PPA38041 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 116 | |||
163 | 208 | |||||
433 | 550 | |||||
1517 | 1580 | |||||
1652 | 1709 | |||||
1907 | 2024 | |||||
2865 | 2944 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S112-19.41 | ||
DB_remark | PPA-CYK-7 protein; contains similarity to Pfam domain PF00651 (BTB/POZ domain); contains similarity to Interpro domains IPR000210 (BTB/POZ domain), IPR011333 (SKP1/BTB/POZ domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276410 | ||||
Corresponding_transcript | PPA38041.1 | |||||
Corresponding_protein | PP51956 | |||||
Corresponding_oligo_set | GPL14372_Probes_82108 | |||||
GPL14372_Probes_82109 | ||||||
GPL14372_Probes_82110 | ||||||
Matching_cDNA | AW097844 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_82108 | |||||
GPL14372_Probes_82109 | ||||||
GPL14372_Probes_82110 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.60167 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |