WormBase Tree Display for CDS: PPA38148
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PPA38148 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 90 | |||
153 | 304 | |||||
477 | 1104 | |||||
1769 | 1926 | |||||
2001 | 2100 | |||||
2161 | 2335 | |||||
2378 | 2420 | |||||
2473 | 2644 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-2.22 | ||
DB_remark | contains similarity to Pfam domain PF13920 (Zinc finger, C3HC4 type (RING finger)); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00276517 | ||||
Corresponding_transcript | PPA38148.1 | |||||
Corresponding_protein | PP73019 | |||||
Corresponding_oligo_set | GPL14372_Probes_30653 | |||||
GPL14372_Probes_30654 | ||||||
GPL14372_Probes_87133 | ||||||
GPL14372_Probes_87134 | ||||||
Microarray_results | GPL14372_Probes_30653 | |||||
GPL14372_Probes_30654 | ||||||
GPL14372_Probes_87133 | ||||||
GPL14372_Probes_87134 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.79962 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |