WormBase Tree Display for CDS: PPA38191
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PPA38191 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-11.18 | ||
DB_remark | PPA-TEG-1 protein; contains similarity to Interpro domains IPR035445 (GYF-like domain superfamily), IPR039905 (CD2 antigen cytoplasmic tail-binding protein 2/Lin1) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276560 | ||||
Corresponding_transcript | PPA38191.1 | |||||
Corresponding_protein | PP67954 | |||||
Corresponding_oligo_set | GPL14372_Probes_88034 | |||||
GPL14372_Probes_88035 | ||||||
Matching_cDNA | FG097007 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_88034 | |||||
GPL14372_Probes_88035 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.28713 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.30357 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |