WormBase Tree Display for CDS: PPA38193
expand all nodes | collapse all nodes | view schema
| PPA38193 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 28 | |||
| 124 | 260 | |||||
| 347 | 457 | |||||
| 645 | 712 | |||||
| 854 | 929 | |||||
| 1140 | 1215 | |||||
| 1266 | 1375 | |||||
| 1488 | 1541 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-11.24 | ||
| DB_remark | contains similarity to Pfam domains PF00466 (Ribosomal protein L10), PF17777 (Insertion domain in 60S ribosomal protein L10P); contains similarity to Interpro domains IPR043141 (Large ribosomal subunit protein uL10-like domain superfamily), IPR001790 (Large ribosomal subunit protein uL10), IPR043164 (Large ribosomal subunit protein uL10-like, insertion domain superfamily), IPR040637 (Large ribosomal subunit protein uL10-like, insertion domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00276562 | ||||
| Corresponding_transcript | PPA38193.1 | |||||
| Corresponding_protein | PP24942 | |||||
| Corresponding_oligo_set | GPL14372_Probes_88040 | |||||
| GPL14372_Probes_88041 | ||||||
| GPL14372_Probes_88043 | ||||||
| Matching_cDNA | AW115258 | Inferred_automatically | transcript_builder.pl | |||
| FG095011 | Inferred_automatically | transcript_builder.pl | ||||
| AA192046 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_88040 | |||||
| GPL14372_Probes_88041 | ||||||
| GPL14372_Probes_88043 | ||||||
| RNASeq_FPKM | WBls:0000032 | 60.1291 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 15.7856 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
