WormBase Tree Display for CDS: PPA38197
expand all nodes | collapse all nodes | view schema
PPA38197 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 76 | |||
351 | 406 | |||||
609 | 700 | |||||
1123 | 1187 | |||||
1434 | 1544 | |||||
1709 | 1807 | |||||
4136 | 4177 | |||||
4399 | 4468 | |||||
4871 | 4979 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-12.26 | ||
DB_remark | PPA-LHFP-4 protein; contains similarity to Pfam domain PF10242 (Lipoma HMGIC fusion partner-like protein); contains similarity to Interpro domain IPR019372 (Lipoma HMGIC fusion partner-like protein) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276566 | ||||
Corresponding_transcript | PPA38197.1 | |||||
Corresponding_protein | PP56362 | |||||
Corresponding_oligo_set | GPL14372_Probes_31063 | |||||
GPL14372_Probes_31064 | ||||||
Microarray_results | GPL14372_Probes_31063 | |||||
GPL14372_Probes_31064 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |