WormBase Tree Display for CDS: PPA38198
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PPA38198 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 224 | |||
308 | 509 | |||||
683 | 889 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-13.11 | ||
DB_remark | contains similarity to Pfam domain PF13920 (Zinc finger, C3HC4 type (RING finger)); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00276567 | ||||
Corresponding_transcript | PPA38198.1 | |||||
Corresponding_protein | PP57859 | |||||
Corresponding_oligo_set | GPL14372_Probes_87999 | |||||
Microarray_results | GPL14372_Probes_87999 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.86515 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |