WormBase Tree Display for CDS: PPA38199
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PPA38199 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 18 | |||
423 | 473 | |||||
678 | 769 | |||||
1077 | 1158 | |||||
1321 | 1404 | |||||
1623 | 1665 | |||||
1888 | 1973 | |||||
2204 | 2308 | |||||
2560 | 2628 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-13.17 | ||
DB_remark | PPA-ELPC-3.1 protein; contains similarity to Pfam domain PF16199 (Radical_SAM C-terminal domain); contains similarity to Interpro domains IPR039661 (ELP3/YhcC), IPR034687 (Elongator complex protein 3-like), IPR032432 (Radical SAM, C-terminal extension) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
End_not_found | ||||||
Visible | Gene | WBGene00276568 | ||||
Corresponding_transcript | PPA38199.1 | |||||
Corresponding_protein | PP63983 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |