WormBase Tree Display for CDS: PPA38216
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PPA38216 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 55 | |||
354 | 474 | |||||
1625 | 1721 | |||||
1947 | 2024 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-18.36 | ||
DB_remark | PPA-ACBP-3 protein; contains similarity to Pfam domain PF00887 (Acyl CoA binding protein); contains similarity to Interpro domains IPR035984 (Acyl-CoA binding protein superfamily), IPR014352 (FERM/acyl-CoA-binding protein superfamily), IPR000582 (Acyl-CoA-binding protein, ACBP) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276585 | ||||
Corresponding_transcript | PPA38216.1 | |||||
Corresponding_protein | PP63656 | |||||
Corresponding_oligo_set | GPL14372_Probes_54771 | |||||
GPL14372_Probes_54772 | ||||||
GPL14372_Probes_54773 | ||||||
GPL14372_Probes_54775 | ||||||
GPL14372_Probes_54776 | ||||||
GPL14372_Probes_54777 | ||||||
Matching_cDNA | FG100858 | Inferred_automatically | transcript_builder.pl | |||
FG097872 | Inferred_automatically | transcript_builder.pl | ||||
BM320166 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_54771 | |||||
GPL14372_Probes_54772 | ||||||
GPL14372_Probes_54773 | ||||||
GPL14372_Probes_54775 | ||||||
GPL14372_Probes_54776 | ||||||
GPL14372_Probes_54777 | ||||||
RNASeq_FPKM | WBls:0000032 | 380.411 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 26.8385 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |