WormBase Tree Display for CDS: PPA38232
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PPA38232 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 171 | |||
328 | 408 | |||||
457 | 537 | |||||
711 | 884 | |||||
1104 | 1181 | |||||
1321 | 1365 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-23.53 | ||
DB_remark | contains similarity to Pfam domain PF00635 (MSP (Major sperm protein) domain); contains similarity to Interpro domains IPR000535 (Major sperm protein (MSP) domain), IPR008962 (PapD-like superfamily), IPR013783 (Immunoglobulin-like fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276601 | ||||
Corresponding_transcript | PPA38232.1 | |||||
Corresponding_protein | PP53770 | |||||
Corresponding_oligo_set | GPL14372_Probes_54462 | |||||
GPL14372_Probes_54463 | ||||||
Microarray_results | GPL14372_Probes_54462 | |||||
GPL14372_Probes_54463 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |