WormBase Tree Display for CDS: PPA38305
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PPA38305 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 207 | |||
489 | 1856 | |||||
1987 | 2196 | |||||
2784 | 2855 | |||||
4722 | 4928 | |||||
5410 | 6747 | |||||
6882 | 7100 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-4.58 | ||
DB_remark | contains similarity to Pfam domain PF02816 (Alpha-kinase family); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR036465 (von Willebrand factor A-like domain superfamily), IPR004166 (Alpha-type protein kinase, alpha-kinase domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276674 | ||||
Corresponding_transcript | PPA38305.1 | |||||
Corresponding_protein | PP55202 | |||||
Corresponding_oligo_set (14) | ||||||
Matching_cDNA | FG099352 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (14) | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.23149 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |