WormBase Tree Display for CDS: PPA38355
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| PPA38355 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (24) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S196-10.51 | ||
| DB_remark | PPA-XPG-1 protein; contains similarity to Pfam domains PF00752 (XPG N-terminal domain), PF00867 (XPG I-region); contains similarity to Interpro domains IPR036279 (5'-3' exonuclease, C-terminal domain superfamily), IPR006086 (XPG-I domain), IPR029060 (PIN-like domain superfamily), IPR006084 (XPG/Rad2 endonuclease), IPR006085 (XPG, N-terminal), IPR008918 (Helix-hairpin-helix motif, class 2) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00276724 | ||||
| Corresponding_transcript | PPA38355.1 | |||||
| Corresponding_protein | PP68661 | |||||
| Corresponding_oligo_set | GPL14372_Probes_51174 | |||||
| Microarray_results | GPL14372_Probes_51174 | |||||
| RNASeq_FPKM | WBls:0000032 | 1.43836 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.69866 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
