WormBase Tree Display for CDS: PPA38406
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| PPA38406 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (61) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S196-20.23 | ||
| DB_remark | contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain), PF02889 (Sec63 Brl domain), PF18149 (N-terminal helicase PWI domain); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR014756 (Immunoglobulin E-set), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR041094 (Brr2, N-terminal helicase PWI domain), IPR036390 (Winged helix DNA-binding domain superfamily), IPR004179 (Sec63 domain), IPR003593 (AAA+ ATPase domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR035892 (C2 domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00276775 | ||||
| Corresponding_transcript | PPA38406.1 | |||||
| Corresponding_protein | PP74383 | |||||
| Corresponding_oligo_set | GPL14372_Probes_51363 | |||||
| GPL14372_Probes_51364 | ||||||
| GPL14372_Probes_51366 | ||||||
| GPL14372_Probes_51368 | ||||||
| GPL14372_Probes_51369 | ||||||
| Matching_cDNA | AI989171 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_51363 | |||||
| GPL14372_Probes_51364 | ||||||
| GPL14372_Probes_51366 | ||||||
| GPL14372_Probes_51368 | ||||||
| GPL14372_Probes_51369 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.11796 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 4.25504 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 21 Feb 2019 09:57:41 | WBPerson4055 | ||||
| Remark | [190221 mh6] updated to the latest set provided my MPG | Curator_confirmed | WBPerson18244 | |||
| Method | curated |
