WormBase Tree Display for CDS: PPA38419
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PPA38419 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-23.26 | ||
DB_remark | PPA-ZIPT-7.2 protein; contains similarity to Pfam domain PF02535 (ZIP Zinc transporter); contains similarity to Interpro domain IPR003689 (Zinc/iron permease) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00276788 | ||||
Corresponding_transcript | PPA38419.1 | |||||
Corresponding_protein | PP70697 | |||||
Corresponding_oligo_set | GPL14372_Probes_51496 | |||||
GPL14372_Probes_51497 | ||||||
Matching_cDNA | FE937051 | Inferred_automatically | transcript_builder.pl | |||
FG098154 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_51496 | |||||
GPL14372_Probes_51497 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.75711 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 16.2817 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |