WormBase Tree Display for CDS: PPA38427
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PPA38427 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 87 | |||
260 | 340 | |||||
650 | 757 | |||||
804 | 906 | |||||
988 | 1118 | |||||
1193 | 1456 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-24.26 | ||
DB_remark | contains similarity to Pfam domain PF07716 (Basic region leucine zipper); contains similarity to Interpro domain IPR004827 (Basic-leucine zipper domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276796 | ||||
Corresponding_transcript | PPA38427.1 | |||||
Corresponding_protein | PP34063 | |||||
Corresponding_oligo_set | GPL14372_Probes_37118 | |||||
GPL14372_Probes_37119 | ||||||
Matching_cDNA | FG096639 | Inferred_automatically | transcript_builder.pl | |||
AW115230 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_37118 | |||||
GPL14372_Probes_37119 | ||||||
RNASeq_FPKM | WBls:0000032 | 5.65212 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |