WormBase Tree Display for CDS: PPA38435
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PPA38435 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 54 | |||
163 | 281 | |||||
372 | 455 | |||||
522 | 606 | |||||
677 | 742 | |||||
1292 | 1396 | |||||
1488 | 1594 | |||||
1711 | 1884 | |||||
1984 | 2128 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-25.54 | ||
DB_remark | contains similarity to Interpro domains IPR016181 (Acyl-CoA N-acyltransferase), IPR010313 (Glycine N-acyltransferase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276804 | ||||
Corresponding_transcript | PPA38435.1 | |||||
Corresponding_protein | PP06798 | |||||
Corresponding_oligo_set | GPL14372_Probes_37184 | |||||
GPL14372_Probes_37185 | ||||||
GPL14372_Probes_37186 | ||||||
GPL14372_Probes_37187 | ||||||
GPL14372_Probes_37188 | ||||||
Matching_cDNA | CK928174 | Inferred_automatically | transcript_builder.pl | |||
FE940532 | Inferred_automatically | transcript_builder.pl | ||||
CK928324 | Inferred_automatically | transcript_builder.pl | ||||
BM812403 | Inferred_automatically | transcript_builder.pl | ||||
BM566056 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_37184 | |||||
GPL14372_Probes_37185 | ||||||
GPL14372_Probes_37186 | ||||||
GPL14372_Probes_37187 | ||||||
GPL14372_Probes_37188 | ||||||
RNASeq_FPKM | WBls:0000032 | 4.10688 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 63.0624 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |