WormBase Tree Display for CDS: PPA38437
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PPA38437 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 25 | |||
67 | 2478 | |||||
2839 | 3116 | |||||
3145 | 4281 | |||||
4323 | 4376 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-26.0 | ||
DB_remark | contains similarity to Pfam domains PF03564 (Protein of unknown function (DUF1759)), PF05380 (Pao retrotransposon peptidase); contains similarity to Interpro domains IPR005312 (Protein of unknown function DUF1759), IPR021109 (Aspartic peptidase domain superfamily), IPR008042 (Retrotransposon, Pao) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276806 | ||||
Corresponding_transcript | PPA38437.1 | |||||
Corresponding_protein | PP71464 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |