WormBase Tree Display for CDS: PPA38438
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PPA38438 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (34) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-26.5 | ||
DB_remark | contains similarity to Pfam domain PF11701 (Myosin-binding striated muscle assembly central); contains similarity to Interpro domains IPR024660 (UNC-45/Cro1/She4, central domain), IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR011989 (Armadillo-like helical), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276807 | ||||
Corresponding_transcript | PPA38438.1 | |||||
Corresponding_protein | PP68183 | |||||
Corresponding_oligo_set | GPL14372_Probes_37278 | |||||
GPL14372_Probes_37279 | ||||||
GPL14372_Probes_37280 | ||||||
GPL14372_Probes_37281 | ||||||
Microarray_results | GPL14372_Probes_37278 | |||||
GPL14372_Probes_37279 | ||||||
GPL14372_Probes_37280 | ||||||
GPL14372_Probes_37281 | ||||||
RNASeq_FPKM | WBls:0000032 | 6.61972 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.13207 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |