WormBase Tree Display for CDS: PPA38451
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PPA38451 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 159 | |||
302 | 427 | |||||
773 | 922 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-0.49 | ||
DB_remark | contains similarity to Interpro domain IPR011082 (Exosome-associated factor Rrp47/DNA strand repair C1D) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276820 | ||||
Corresponding_transcript | PPA38451.1 | |||||
Corresponding_protein | PP54375 | |||||
Corresponding_oligo_set | GPL14372_Probes_78321 | |||||
GPL14372_Probes_78322 | ||||||
GPL14372_Probes_78323 | ||||||
Matching_cDNA | EB183962 | Inferred_automatically | transcript_builder.pl | |||
CK928224 | Inferred_automatically | transcript_builder.pl | ||||
FG099379 | Inferred_automatically | transcript_builder.pl | ||||
FG101236 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_78321 | |||||
GPL14372_Probes_78322 | ||||||
GPL14372_Probes_78323 | ||||||
RNASeq_FPKM | WBls:0000032 | 165.902 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 87.1222 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |