WormBase Tree Display for CDS: PPA38482
expand all nodes | collapse all nodes | view schema
PPA38482 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (50) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-5.33 | ||
DB_remark | PPA-NPP-11.1 protein; contains similarity to Pfam domains PF02373 (JmjC domain, hydroxylase), PF05064 (Nsp1-like C-terminal region), PF13634 (Nucleoporin FG repeat region); contains similarity to Interpro domains IPR026010 (Nucleoporin NSP1/NUP62), IPR003347 (JmjC domain), IPR025574 (Nucleoporin FG repeat), IPR007758 (Nucleoporin, NSP1-like, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276851 | ||||
Corresponding_transcript | PPA38482.1 | |||||
Corresponding_protein | PP65510 | |||||
Corresponding_oligo_set | GPL14372_Probes_77639 | |||||
GPL14372_Probes_77642 | ||||||
GPL14372_Probes_77643 | ||||||
GPL14372_Probes_77644 | ||||||
Microarray_results | GPL14372_Probes_77639 | |||||
GPL14372_Probes_77642 | ||||||
GPL14372_Probes_77643 | ||||||
GPL14372_Probes_77644 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.47833 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.61868 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |