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WormBase Tree Display for CDS: PPA38482

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Name Class

PPA38482SMapS_parentSequencePPA_ChrI
StructureSource_exons (50)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S207-5.33
DB_remarkPPA-NPP-11.1 protein; contains similarity to Pfam domains PF02373 (JmjC domain, hydroxylase), PF05064 (Nsp1-like C-terminal region), PF13634 (Nucleoporin FG repeat region); contains similarity to Interpro domains IPR026010 (Nucleoporin NSP1/NUP62), IPR003347 (JmjC domain), IPR025574 (Nucleoporin FG repeat), IPR007758 (Nucleoporin, NSP1-like, C-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00276851
Corresponding_transcriptPPA38482.1
Corresponding_proteinPP65510
Corresponding_oligo_setGPL14372_Probes_77639
GPL14372_Probes_77642
GPL14372_Probes_77643
GPL14372_Probes_77644
Microarray_resultsGPL14372_Probes_77639
GPL14372_Probes_77642
GPL14372_Probes_77643
GPL14372_Probes_77644
RNASeq_FPKMWBls:00000321.47833From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001012.61868From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated