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WormBase Tree Display for CDS: PPA38497

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Name Class

PPA38497SMapS_parentSequencePPA_ChrI
StructureSource_exons (18)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S207-9.30
DB_remarkcontains similarity to Pfam domains PF00288 (GHMP kinases N terminal domain), PF08544 (GHMP kinases C terminal), PF10509 (Galactokinase galactose-binding signature); contains similarity to Interpro domains IPR019539 (Galactokinase, N-terminal domain), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR036554 (GHMP kinase, C-terminal domain superfamily), IPR014721 (Small ribosomal subunit protein uS5 domain 2-type fold, subgroup), IPR013750 (GHMP kinase, C-terminal domain), IPR000705 (Galactokinase), IPR006204 (GHMP kinase N-terminal domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00276866
Corresponding_transcriptPPA38497.1
Corresponding_proteinPP63686
Corresponding_oligo_setGPL14372_Probes_77327
GPL14372_Probes_77328
GPL14372_Probes_77329
Microarray_resultsGPL14372_Probes_77327
GPL14372_Probes_77328
GPL14372_Probes_77329
RNASeq_FPKMWBls:00000322.13406From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001012.52038From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated