WormBase Tree Display for CDS: PPA38497
expand all nodes | collapse all nodes | view schema
PPA38497 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (18) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-9.30 | ||
DB_remark | contains similarity to Pfam domains PF00288 (GHMP kinases N terminal domain), PF08544 (GHMP kinases C terminal), PF10509 (Galactokinase galactose-binding signature); contains similarity to Interpro domains IPR019539 (Galactokinase, N-terminal domain), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR036554 (GHMP kinase, C-terminal domain superfamily), IPR014721 (Small ribosomal subunit protein uS5 domain 2-type fold, subgroup), IPR013750 (GHMP kinase, C-terminal domain), IPR000705 (Galactokinase), IPR006204 (GHMP kinase N-terminal domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276866 | ||||
Corresponding_transcript | PPA38497.1 | |||||
Corresponding_protein | PP63686 | |||||
Corresponding_oligo_set | GPL14372_Probes_77327 | |||||
GPL14372_Probes_77328 | ||||||
GPL14372_Probes_77329 | ||||||
Microarray_results | GPL14372_Probes_77327 | |||||
GPL14372_Probes_77328 | ||||||
GPL14372_Probes_77329 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.13406 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.52038 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |