WormBase Tree Display for CDS: PPA38504
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| PPA38504 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (50) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-12.20 | ||
| DB_remark | contains similarity to Pfam domains PF00096 (Zinc finger, C2H2 type), PF00628 (PHD-finger), PF12269 (CpG binding protein C-terminal domain), PF12874 (Zinc-finger of C2H2 type); contains similarity to Interpro domains IPR022056 (CpG binding protein, C-terminal), IPR037869 (Spp1/CFP1), IPR011011 (Zinc finger, FYVE/PHD-type), IPR019787 (Zinc finger, PHD-finger), IPR036236 (Zinc finger C2H2 superfamily), IPR001965 (Zinc finger, PHD-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013087 (Zinc finger C2H2-type) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00276873 | ||||
| Corresponding_transcript | PPA38504.1 | |||||
| Corresponding_protein | PP64366 | |||||
| Corresponding_oligo_set (14) | ||||||
| Microarray_results (14) | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.37572 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 16.8332 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
