WormBase Tree Display for CDS: PPA38526
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PPA38526 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 56 | |||
105 | 163 | |||||
220 | 299 | |||||
366 | 570 | |||||
693 | 797 | |||||
843 | 898 | |||||
983 | 1091 | |||||
1140 | 1223 | |||||
1301 | 1362 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-18.5 | ||
DB_remark | contains similarity to Pfam domain PF00089 (Trypsin); contains similarity to Interpro domains IPR043504 (Peptidase S1, PA clan, chymotrypsin-like fold), IPR001254 (Serine proteases, trypsin domain), IPR009003 (Peptidase S1, PA clan) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276895 | ||||
Corresponding_transcript | PPA38526.1 | |||||
Corresponding_protein | PP62620 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |