WormBase Tree Display for CDS: PPA38534
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PPA38534 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 89 | |||
306 | 411 | |||||
533 | 632 | |||||
793 | 867 | |||||
916 | 977 | |||||
1025 | 1108 | |||||
1304 | 1459 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-19.46 | ||
DB_remark | PPA-PRDX-6 protein; contains similarity to Pfam domains PF00578 (AhpC/TSA family), PF10417 (C-terminal domain of 1-Cys peroxiredoxin); contains similarity to Interpro domains IPR024706 (Peroxiredoxin, AhpC-type), IPR019479 (Peroxiredoxin, C-terminal), IPR000866 (Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant), IPR036249 (Thioredoxin-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276903 | ||||
Corresponding_transcript | PPA38534.1 | |||||
Corresponding_protein | PP02237 | |||||
Corresponding_oligo_set | GPL14372_Probes_72534 | |||||
GPL14372_Probes_72535 | ||||||
GPL14372_Probes_72536 | ||||||
GPL14372_Probes_72537 | ||||||
GPL14372_Probes_72538 | ||||||
Matching_cDNA | FG106745 | Inferred_automatically | transcript_builder.pl | |||
FG102370 | Inferred_automatically | transcript_builder.pl | ||||
FG102841 | Inferred_automatically | transcript_builder.pl | ||||
FG104093 | Inferred_automatically | transcript_builder.pl | ||||
FG106003 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_72534 | |||||
GPL14372_Probes_72535 | ||||||
GPL14372_Probes_72536 | ||||||
GPL14372_Probes_72537 | ||||||
GPL14372_Probes_72538 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 89.8774 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |