WormBase Tree Display for CDS: PPA38563
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PPA38563 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (58) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-24.83 | ||
DB_remark | PPA-LACT-7 protein; contains similarity to Pfam domains PF00144 (Beta-lactamase), PF17660 (Bacterial tandem repeat domain 1); contains similarity to Interpro domains IPR001466 (Beta-lactamase-related), IPR035979 (RNA-binding domain superfamily), IPR012338 (Beta-lactamase/transpeptidase-like), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276932 | ||||
Corresponding_transcript | PPA38563.1 | |||||
Corresponding_protein | PP57721 | |||||
Corresponding_oligo_set | GPL14372_Probes_72209 | |||||
GPL14372_Probes_72210 | ||||||
GPL14372_Probes_72211 | ||||||
Microarray_results | GPL14372_Probes_72209 | |||||
GPL14372_Probes_72210 | ||||||
GPL14372_Probes_72211 | ||||||
RNASeq_FPKM | WBls:0000032 | 15.0451 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 14.2134 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |