WormBase Tree Display for CDS: PPA38598
expand all nodes | collapse all nodes | view schema
PPA38598 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 110 | |||
179 | 268 | |||||
311 | 412 | |||||
453 | 579 | |||||
625 | 698 | |||||
759 | 1073 | |||||
3840 | 3936 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S230-0.9 | ||
DB_remark | contains similarity to Interpro domains IPR036236 (Zinc finger C2H2 superfamily), IPR013087 (Zinc finger C2H2-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276967 | ||||
Corresponding_transcript | PPA38598.1 | |||||
Corresponding_protein | PP65299 | |||||
Corresponding_oligo_set | GPL14372_Probes_38739 | |||||
GPL14372_Probes_38740 | ||||||
GPL14372_Probes_38742 | ||||||
Matching_cDNA | FG095726 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_38739 | |||||
GPL14372_Probes_38740 | ||||||
GPL14372_Probes_38742 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 16.0649 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |