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WormBase Tree Display for CDS: PPA38603

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Name Class

PPA38603SMapS_parentSequencePPA_ChrIV
StructureSource_exons1144
347502
689748
16352033
DB_infoDatabasepristionchus.orgcdsgene-UMM-S230-0.30
DB_remarkcontains similarity to Pfam domain PF04410 (Gar1/Naf1 RNA binding region); contains similarity to Interpro domains IPR007504 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1), IPR009000 (Translation protein, beta-barrel domain superfamily), IPR038664 (H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00276972
Corresponding_transcriptPPA38603.1
Corresponding_proteinPP68246
Matching_cDNAFE937286Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:000003263.3936From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:0000101129.351From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated