WormBase Tree Display for CDS: PPA38603
expand all nodes | collapse all nodes | view schema
PPA38603 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 144 | |||
347 | 502 | |||||
689 | 748 | |||||
1635 | 2033 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S230-0.30 | ||
DB_remark | contains similarity to Pfam domain PF04410 (Gar1/Naf1 RNA binding region); contains similarity to Interpro domains IPR007504 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1), IPR009000 (Translation protein, beta-barrel domain superfamily), IPR038664 (H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276972 | ||||
Corresponding_transcript | PPA38603.1 | |||||
Corresponding_protein | PP68246 | |||||
Matching_cDNA | FE937286 | Inferred_automatically | transcript_builder.pl | |||
RNASeq_FPKM | WBls:0000032 | 63.3936 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 129.351 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |