WormBase Tree Display for CDS: PPA38851
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| PPA38851 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (42) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S245-13.5 | ||
| DB_remark | contains similarity to Pfam domains PF00454 (Phosphatidylinositol 3- and 4-kinase), PF00613 (Phosphoinositide 3-kinase family, accessory domain (PIK domain)), PF00792 (Phosphoinositide 3-kinase C2), PF00794 (PI3-kinase family, ras-binding domain), PF02192 (PI3-kinase family, p85-binding domain); contains similarity to Interpro domains IPR003113 (Phosphatidylinositol 3-kinase, adaptor-binding domain), IPR002420 (C2 phosphatidylinositol 3-kinase-type domain), IPR011009 (Protein kinase-like domain superfamily), IPR029071 (Ubiquitin-like domain superfamily), IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain), IPR015433 (Phosphatidylinositol kinase), IPR036940 (Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily), IPR001263 (Phosphoinositide 3-kinase, accessory (PIK) domain), IPR042236 (Phosphoinositide 3-kinase, accessory (PIK) domain superfamily), IPR016024 (Armadillo-type fold), IPR000341 (Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00277220 | ||||
| Corresponding_transcript | PPA38851.1 | |||||
| Corresponding_protein | PP66067 | |||||
| Corresponding_oligo_set | GPL14372_Probes_67819 | |||||
| GPL14372_Probes_67820 | ||||||
| Microarray_results | GPL14372_Probes_67819 | |||||
| GPL14372_Probes_67820 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
