WormBase Tree Display for CDS: PPA38981
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PPA38981 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (35) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S259-3.36 | ||
DB_remark | contains similarity to Pfam domains PF00059 (Lectin C-type domain), PF00431 (CUB domain); contains similarity to Interpro domains IPR000859 (CUB domain), IPR016186 (C-type lectin-like/link domain superfamily), IPR001304 (C-type lectin-like), IPR035914 (Spermadhesin, CUB domain superfamily), IPR016187 (C-type lectin fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00277350 | ||||
Corresponding_transcript | PPA38981.1 | |||||
Corresponding_protein | PP69946 | |||||
Corresponding_oligo_set | GPL14372_Probes_73348 | |||||
GPL14372_Probes_73349 | ||||||
GPL14372_Probes_73350 | ||||||
GPL14372_Probes_73351 | ||||||
GPL14372_Probes_73352 | ||||||
Microarray_results | GPL14372_Probes_73348 | |||||
GPL14372_Probes_73349 | ||||||
GPL14372_Probes_73350 | ||||||
GPL14372_Probes_73351 | ||||||
GPL14372_Probes_73352 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.09467 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 16.8056 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |