WormBase Tree Display for CDS: PPA39114
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PPA39114 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 79 | |||
224 | 311 | |||||
3176 | 3302 | |||||
3405 | 3482 | |||||
5834 | 5911 | |||||
11407 | 11520 | |||||
11589 | 11666 | |||||
11769 | 12419 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S273-6.43 | ||
DB_remark | contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00277483 | ||||
Corresponding_transcript | PPA39114.1 | |||||
Corresponding_protein | PP66864 | |||||
Corresponding_oligo_set | GPL14372_Probes_79323 | |||||
Matching_cDNA (16) | ||||||
Microarray_results | GPL14372_Probes_79323 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.49828 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |