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WormBase Tree Display for CDS: PPA39114

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Name Class

PPA39114SMapS_parentSequencePPA_ChrII
StructureSource_exons179
224311
31763302
34053482
58345911
1140711520
1158911666
1176912419
DB_infoDatabasepristionchus.orgcdsgene-UMM-S273-6.43
DB_remarkcontains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00277483
Corresponding_transcriptPPA39114.1
Corresponding_proteinPP66864
Corresponding_oligo_setGPL14372_Probes_79323
Matching_cDNA (16)
Microarray_resultsGPL14372_Probes_79323
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.49828From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated