WormBase Tree Display for CDS: PPA39229
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PPA39229 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (11) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S278-12.107 | ||
DB_remark | contains similarity to Pfam domains PF00078 (Reverse transcriptase (RNA-dependent DNA polymerase)), PF00178 (Ets-domain); contains similarity to Interpro domains IPR043502 (DNA/RNA polymerase superfamily), IPR000477 (Reverse transcriptase domain), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR000418 (Ets domain), IPR043128 (Reverse transcriptase/Diguanylate cyclase domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00277598 | ||||
Corresponding_transcript | PPA39229.1 | |||||
Corresponding_protein | PP72071 | |||||
Corresponding_oligo_set | GPL14372_Probes_43148 | |||||
GPL14372_Probes_43149 | ||||||
Microarray_results | GPL14372_Probes_43148 | |||||
GPL14372_Probes_43149 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |