WormBase Tree Display for CDS: PPA39512
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| PPA39512 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (45) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S296-5.40 | ||
| DB_remark | contains similarity to Pfam domains PF00657 (GDSL-like Lipase/Acylhydrolase), PF01189 (16S rRNA methyltransferase RsmB/F), PF05347 (Complex 1 protein (LYR family)), PF06391 (CDK-activating kinase assembly factor MAT1), PF17121 (Zinc finger, C3HC4 type (RING finger)), PF17125 (N-terminal domain of 16S rRNA methyltransferase RsmF); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR004575 (Cdk-activating kinase assembly factor MAT1/Tfb3), IPR008011 (Complex 1 LYR protein domain), IPR015877 (Cdk-activating kinase assembly factor MAT1, centre), IPR001087 (GDSL lipase/esterase), IPR001678 (SAM-dependent methyltransferase RsmB-F/NOP2-type domain), IPR023273 (RNA (C5-cytosine) methyltransferase, NOP2), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR031341 (Ribosomal RNA small subunit methyltransferase F, N-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR023267 (RNA (C5-cytosine) methyltransferase) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00277881 | ||||
| Corresponding_transcript | PPA39512.1 | |||||
| Corresponding_protein | PP63529 | |||||
| Corresponding_oligo_set (11) | ||||||
| Microarray_results (11) | ||||||
| RNASeq_FPKM | WBls:0000032 | 15.3854 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 5.45069 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
