WormBase Tree Display for CDS: PPA39551
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PPA39551 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 96 | |||
220 | 300 | |||||
543 | 653 | |||||
811 | 924 | |||||
994 | 1071 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S296-10.65 | ||
DB_remark | contains similarity to Pfam domain PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR016897 (S-phase kinase-associated protein 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00277920 | ||||
Corresponding_transcript | PPA39551.1 | |||||
Corresponding_protein | PP67782 | |||||
Corresponding_oligo_set | GPL14372_Probes_82487 | |||||
Microarray_results | GPL14372_Probes_82487 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 27.5163 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |