WormBase Tree Display for CDS: PPA39762
expand all nodes | collapse all nodes | view schema
PPA39762 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 110 | |||
156 | 206 | |||||
281 | 389 | |||||
468 | 543 | |||||
610 | 767 | |||||
841 | 1008 | |||||
1109 | 1207 | |||||
1284 | 1424 | |||||
1493 | 1657 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S336-5.15 | ||
DB_remark | contains similarity to Pfam domain PF00344 (SecY); contains similarity to Interpro domains IPR023201 (SecY domain superfamily), IPR002208 (SecY/SEC61-alpha family) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00278131 | ||||
Corresponding_transcript | PPA39762.1 | |||||
Corresponding_protein | PP58160 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |