WormBase Tree Display for CDS: PPA39794
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| PPA39794 | SMap | S_parent | Sequence | PPA_ChrIII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (29) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S341-2.68 | ||
| DB_remark | PPA-PHLP-2 protein; contains similarity to Pfam domains PF00481 (Protein phosphatase 2C), PF00560 (Leucine Rich Repeat), PF12799 (Leucine Rich repeats (2 copies)), PF13855 (Leucine rich repeat); contains similarity to Interpro domains IPR036457 (PPM-type phosphatase-like domain superfamily), IPR025875 (Leucine rich repeat 4), IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR001932 (PPM-type phosphatase-like domain), IPR032675 (Leucine-rich repeat domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00278163 | ||||
| Corresponding_transcript | PPA39794.1 | |||||
| Corresponding_protein | PP69818 | |||||
| Corresponding_oligo_set | GPL14372_Probes_66500 | |||||
| GPL14372_Probes_66501 | ||||||
| Microarray_results | GPL14372_Probes_66500 | |||||
| GPL14372_Probes_66501 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
