WormBase Tree Display for CDS: PPA40022
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PPA40022 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrX | |||
Structure | Source_exons | 1 | 157 | |||
344 | 477 | |||||
783 | 851 | |||||
953 | 1021 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S398-4.139 | ||
DB_remark | contains similarity to Pfam domain PF01060 (Transthyretin-like family); contains similarity to Interpro domains IPR038479 (Transthyretin-like superfamily), IPR001534 (Transthyretin-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00278391 | ||||
Corresponding_transcript | PPA40022.1 | |||||
Corresponding_protein | PP25663 | |||||
Corresponding_oligo_set | GPL14372_Probes_74590 | |||||
Microarray_results | GPL14372_Probes_74590 | |||||
RNASeq_FPKM | WBls:0000032 | 14.2642 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |