WormBase Tree Display for CDS: PPA40117
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PPA40117 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 63 | |||
193 | 304 | |||||
347 | 503 | |||||
544 | 623 | |||||
667 | 720 | |||||
765 | 913 | |||||
961 | 1014 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S421-2.142 | ||
DB_remark | PPA-MADF-5 protein; contains similarity to Pfam domain PF10545 (Alcohol dehydrogenase transcription factor Myb/SANT-like); contains similarity to Interpro domains IPR039353 (Transcription factor Adf-1), IPR006578 (MADF domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00278486 | ||||
Corresponding_transcript | PPA40117.1 | |||||
Corresponding_protein | PP69815 | |||||
Corresponding_oligo_set | GPL14372_Probes_64580 | |||||
GPL14372_Probes_64581 | ||||||
Microarray_results | GPL14372_Probes_64580 | |||||
GPL14372_Probes_64581 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |